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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
RNA microarray
62
total RNA-seq
59
ChIP-seq
13
ATAC-seq
8
snATAC-seq
1
pCHi-C
Assay category
62
Transcription
59
DNA binding
21
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
narrow histone mark
Date released
66
February, 2021
27
December, 2018
17
January, 2019
15
November, 2018
8
February, 2023
8
January, 2021
1
January, 2018
1
May, 2021
Available data
125
bam
112
bigWig
61
bed narrowPeak
59
fastq
58
tsv
53
bigBed narrowPeak
4
bed bed3
4
txt
Organism
143
Homo sapiens
Biosample type
74
tissue
60
cell line
9
primary cell
Organ
866
pancreas
729
liver
649
connective tissue
477
adipose tissue
469
epithelium
350
heart
337
kidney
208
vasculature
203
blood vessel
169
brain
135
artery
107
limb
81
musculature of body
75
bone element
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
15
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
134
AMP
9
T1D
Genome assembly (visualization)
124
hg19
119
GRCh38
Lab
134
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
RNA microarray
files.file_type!
bedpe bed3+
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
143 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
tissue
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
+ See 8 more…
cell line
GM12878
59
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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