Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ATAC-seq
73
total RNA-seq
47
WGBS
46
ChIP-seq
11
snATAC-seq
10
MeRIP-seq
5
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
122
DNA accessibility
73
Transcription
49
DNA methylation
46
DNA binding
5
3D chromatin structure
Target of assay
42
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
104
May, 2022
56
February, 2023
29
August, 2017
24
November, 2019
18
May, 2021
16
September, 2020
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
6
February, 2021
6
September, 2017
5
March, 2019
4
August, 2021
4
July, 2018
4
March, 2020
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
636
bam
bigWig
434
fastq
415
tsv
174
bed narrowPeak
80
zippedFastqFolder
51
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
cool
1
bedpe
1
hdf5
Organism
307
Homo sapiens
Biosample type
151
primary cell
121
tissue
36
cell line
1
in vitro differentiated cells
Organ
309
pancreas
221
kidney
219
epithelium
169
heart
169
liver
95
connective tissue
81
vasculature
80
blood vessel
64
brain
56
artery
55
eye
47
adipose tissue
31
limb
28
musculature of body
20
lung
17
bone element
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
AMP
139
HPAP
28
T1D
Genome assembly (visualization)
48
hg19
24
GRCh38
Lab
139
Klaus Kaestner, Upenn
102
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
28
inconsistent ontology term
1
audit script error
assay_title!
RNA microarray
files.file_type!
bigWig
cool
month_released!
October, 2018
BIOSAMPLE
ASSAY
309 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
22
42
31
6
pancreatic beta cell
13
11
16
6
pancreatic acinar cell
4
tissue
islet of Langerhans
55
18
21
7
4
3
1
pancreas
1
2
4
1
1
1
body of pancreas
1
1
cell line
EndoC_BH1
17
2
6
1
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
Download