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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
49
total RNA-seq
10
ATAC-seq
9
ChIP-seq
6
snATAC-seq
4
Capture-C
1
Hi-C
RNA microarray
Assay category
155
Transcription
16
DNA accessibility
9
DNA binding
1
3D chromatin structure
Target of assay
8
control
1
broad histone mark
1
histone
1
histone modification
Date released
202
February, 2023
185
August, 2021
180
May, 2022
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
80
February, 2021
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
3
December, 2019
3
March, 2019
1
August, 2018
1
August, 2022
1
September, 2018
Available data
113
tsv
92
bed narrowPeak
xls
57
txt
49
bam
bigWig
24
tagAlign
5
bed bed3+
1
hic
Organism
185
Homo sapiens
Biosample type
162
tissue
20
in vitro differentiated cells
2
cell line
1
primary cell
Organ
92
heart
64
kidney
6
blood vessel
6
vasculature
3
epithelium
2
artery
2
connective tissue
2
pancreas
1
liver
Project
185
AMP
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
119
AMP-T2D consortium
64
Katalin Susztak, Upenn
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
assay_title!
RNA microarray
files.file_type!
bigWig
xls
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
185 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 9 more…
in vitro differentiated cells
neural progenitor cell
10
8
adipocyte
1
osteoblast
1
cell line
EndoC_BH1
2
primary cell
hepatocyte
1
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