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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
12
total RNA-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
35
DNA binding
12
Transcription
2
DNA accessibility
2
DNA methylation
Target of assay
25
control
21
histone
21
histone modification
narrow histone mark
10
broad histone mark
Date released
17
November, 2017
12
February, 2020
8
October, 2017
8
October, 2019
3
May, 2019
2
July, 2019
2
March, 2020
1
February, 2023
Available data
138
bam
bigWig
97
bed narrowPeak
94
bigBed narrowPeak
64
tagAlign
39
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
53
Homo sapiens
Biosample type
52
tissue
1
primary cell
Organ
319
pancreas
221
epithelium
221
kidney
169
heart
161
liver
98
connective tissue
80
vasculature
79
blood vessel
56
artery
55
adipose tissue
53
brain
53
eye
30
limb
26
musculature of body
20
lung
17
bone element
16
skeleton
14
blood
bodily fluid
12
nerve
9
spleen
7
embryo
6
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
53
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
53
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
RNA microarray
files.file_type!
bigWig
organ_slims!
bodily fluid
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
total RNA-seq
ATAC-seq
RRBS
pCHi-C
tissue
brain
8
1
1
cingulate gyrus
5
layer of hippocampus
5
caudate nucleus
2
1
cerebellum (Hemisphere)
2
1
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primary cell
choroid plexus epithelial cell
1
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