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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
386
total RNA-seq
37
ChIP-seq
3
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
386
Transcription
37
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
19
control
17
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
23
October, 2018
17
August, 2017
July, 2019
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
430
bam
413
bigWig
389
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
430
Homo sapiens
Biosample type
430
tissue
Organ
685
pancreas
674
liver
577
connective tissue
430
adipose tissue
312
epithelium
230
brain
190
heart
176
vasculature
171
blood vessel
137
kidney
113
limb
99
artery
66
bone element
60
blood
60
bodily fluid
52
musculature of body
42
nerve
36
embryo
24
spleen
20
vein
18
ureter
8
skeleton
7
eye
1
pituitary gland
Project
430
AMP
Genome assembly (visualization)
411
GRCh38
409
hg19
Lab
430
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
RNA microarray
month_released!
July, 2019
organ_slims!
spinal cord
BIOSAMPLE
ASSAY
430 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
tissue
adipose tissue
381
2
2
subcutaneous adipose tissue
2
12
1
omental fat pad
11
1
2
white adipose tissue
12
visceral abdominal adipose tissue
3
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