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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
12
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Date released
10
February, 2023
3
October, 2022
2
February, 2021
1
August, 2021
Available data
3181
bam
2945
bigWig
1626
bed narrowPeak
1430
tsv
1358
fastq
948
bigBed narrowPeak
392
tagAlign
292
bed broadPeak
255
bigBed broadPeak
243
bed bed3+
153
zippedFastqFolder
77
txt
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
16
Homo sapiens
Biosample type
5
in vitro differentiated cells
5
tissue
4
primary cell
2
cell line
Organ
6
connective tissue
4
bone element
4
skeleton
3
epithelium
3
pancreas
2
liver
1
brain
Project
13
AMP
3
HPAP
Genome assembly (visualization)
15
hg19
2
GRCh38
Lab
12
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
3
audit script error
1
inconsistent replicate
assay_title!
RNA microarray
organ_slims!
heart
BIOSAMPLE
ASSAY
16 results
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Clear Filters
ATAC-seq
Hi-C
whole genome sequencing assay
in vitro differentiated cells
chondrocyte
5
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
primary cell
osteoblast
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
HepG2
1
1
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