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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
RNA microarray
53
total RNA-seq
21
ChIP-seq
13
single cell RNA-seq
4
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
66
Transcription
21
DNA binding
5
DNA accessibility
Target of assay
21
histone
21
histone modification
12
broad histone mark
9
narrow histone mark
Date released
57
August, 2021
20
August, 2017
7
February, 2023
5
February, 2021
1
May, 2022
1
November, 2017
1
October, 2017
1
October, 2022
Available data
bam
3097
bigWig
1745
bed narrowPeak
1598
tsv
1264
fastq
992
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
258
bed bed3+
153
zippedFastqFolder
77
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
92
Homo sapiens
Biosample type
89
tissue
3
in vitro differentiated cells
1
cell line
Organ
62
kidney
14
musculature of body
7
pancreas
4
bone element
4
skeleton
1
adipose tissue
1
brain
1
connective tissue
Project
93
AMP
Genome assembly (visualization)
26
hg19
1
GRCh38
Lab
57
Katalin Susztak, Upenn
32
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
6
audit script error
1
inconsistent ontology term
assay_title!
RNA microarray
files.file_type!
bam
month_released!
December, 2017
BIOSAMPLE
ASSAY
93 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
49
13
skeletal muscle tissue
13
1
islet of Langerhans
6
1
acetabular part of hip bone
1
cingulate gyrus
1
+ See 4 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
See all biosamples
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