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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ChIP-seq
3
WGBS
3
single cell RNA-seq
2
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
150
DNA binding
4
DNA accessibility
3
DNA methylation
3
Transcription
Target of assay
90
transcription factor
31
control
27
histone
27
histone modification
19
RNA binding protein
14
narrow histone mark
12
broad histone mark
12
chromatin remodeller
Date released
72
August, 2017
27
December, 2018
23
October, 2018
18
January, 2019
16
November, 2018
2
July, 2018
1
April, 2018
1
August, 2018
1
October, 2017
Available data
653
bam
625
bigWig
478
tsv
161
fastq
129
bed narrowPeak
82
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
161
Homo sapiens
Biosample type
60
cell line
55
in vitro differentiated cells
43
tissue
3
primary cell
Organ
471
pancreas
465
liver
257
epithelium
101
connective tissue
60
blood
60
bodily fluid
44
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
161
AMP
Genome assembly (visualization)
129
GRCh38
127
hg19
Lab
161
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
RNA microarray
organ_slims!
limb
BIOSAMPLE
ASSAY
161 results
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Clear Filters
ChIP-seq
WGBS
single cell RNA-seq
ATAC-seq
DNase-seq
pCHi-C
cell line
GM12878
60
in vitro differentiated cells
adipocyte
53
1
white fat cell
1
tissue
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
white adipose tissue
12
adipose tissue
2
3
primary cell
pancreatic stellate cell
3
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