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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
RNA microarray
65
single cell RNA-seq
55
total RNA-seq
41
WGBS
39
ATAC-seq
22
snATAC-seq
1
MPRA
Assay category
120
Transcription
61
DNA accessibility
41
DNA methylation
Date released
141
May, 2022
57
August, 2021
19
September, 2020
February, 2023
5
February, 2021
1
October, 2022
Available data
3392
bam
3166
bigWig
1752
bed narrowPeak
1582
tsv
1282
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
269
bed bed3+
153
zippedFastqFolder
70
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
4
bed bedgraph
4
tar
3
cool
2
bed bed3
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
222
Homo sapiens
Biosample type
153
primary cell
69
tissue
1
cell line
Organ
86
pancreas
80
epithelium
62
kidney
1
musculature of body
Project
153
HPAP
70
AMP
Genome assembly (visualization)
1
hg19
Lab
153
Klaus Kaestner, Upenn
57
Katalin Susztak, Upenn
7
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
6
audit script error
assay_title!
RNA microarray
month_released!
February, 2023
BIOSAMPLE
ASSAY
223 results
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Clear Filters
single cell RNA-seq
total RNA-seq
WGBS
ATAC-seq
snATAC-seq
MPRA
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
tissue
kidney
13
49
islet of Langerhans
6
skeletal muscle tissue
1
cell line
MIN6
1
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