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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
RNA microarray
10
total RNA-seq
5
single cell RNA-seq
3
ATAC-seq
1
snATAC-seq
Assay category
15
Transcription
4
DNA accessibility
Date released
August, 2021
7
February, 2023
7
May, 2022
5
February, 2021
Available data
3336
bam
3116
bigWig
1705
bed narrowPeak
1475
tsv
1351
fastq
1036
bigBed narrowPeak
367
tagAlign
316
bed broadPeak
285
bigBed broadPeak
268
bed bed3+
153
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
21
bedpe bed3+
21
hic
19
txt
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
19
Homo sapiens
Biosample type
16
tissue
3
in vitro differentiated cells
Organ
6
pancreas
5
kidney
4
bone element
4
skeleton
1
musculature of body
Project
19
AMP
Genome assembly (visualization)
4
hg19
Lab
10
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
6
audit script error
1
inconsistent ontology term
assay_title!
RNA microarray
month_released!
August, 2021
BIOSAMPLE
ASSAY
19 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
tissue
islet of Langerhans
6
kidney
5
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
See all biosamples
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