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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ChIP-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
4
Transcription
3
DNA binding
Target of assay
6
histone
6
histone modification
broad histone mark
2
narrow histone mark
1
control
Date released
4
March, 2023
3
August, 2017
April, 2020
1
February, 2023
1
October, 2022
Available data
3
bam
3
fastq
3
tagAlign
2
bed broadPeak
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
txt
Organism
Homo sapiens
Biosample type
4
cell line
3
tissue
2
stem cell
Organ
4
pancreas
1
epithelium
Project
5
AMP
4
community
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
5
AMP-T2D consortium
4
Anna Gloyn, Oxford
assay_title!
RNA microarray
month_released!
April, 2020
October, 2018
replicates.library.biosample.donor.organism.scientific_name!
Homo sapiens
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
9 results
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ChIP-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC-BH1
1
1
EndoC_BH1
1
MIN6
1
tissue
pancreas
3
stem cell
SB Ad3.1
1
1
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