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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
23
ChIP-seq
4
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
RNA microarray
Assay category
401
Transcription
23
DNA binding
6
DNA accessibility
Target of assay
18
control
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
November, 2019
1
October, 2017
1
October, 2019
Available data
424
bam
408
bigWig
401
tsv
26
fastq
9
bed narrowPeak
8
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
432
Homo sapiens
Biosample type
429
tissue
2
primary cell
1
in vitro differentiated cells
Organ
737
liver
703
pancreas
557
connective tissue
478
epithelium
432
adipose tissue
393
heart
352
kidney
286
brain
236
vasculature
230
blood vessel
141
artery
122
limb
75
bone element
70
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
432
AMP
Genome assembly (visualization)
410
hg19
407
GRCh38
Lab
432
AMP-T2D consortium
assay_title!
RNA microarray
month_released!
August, 2017
November, 2019
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
432 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
tissue
adipose tissue
382
3
1
omental fat pad
5
11
1
1
2
subcutaneous adipose tissue
7
12
1
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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