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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
DNase-seq
37
ATAC-seq
37
ChIP-seq
26
total RNA-seq
4
Hi-C
4
pCHi-C
1
RRBS
1
WGBS
Assay category
77
DNA accessibility
37
DNA binding
26
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
52
histone
52
histone modification
broad histone mark
18
control
18
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
61
October, 2019
39
June, 2019
31
February, 2023
6
February, 2021
6
July, 2019
4
February, 2020
3
May, 2019
Available data
91
bed narrowPeak
87
bam
63
bigWig
56
bigBed narrowPeak
40
bed bed3+
40
bed broadPeak
40
bigBed broadPeak
12
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
150
Homo sapiens
Biosample type
145
tissue
5
primary cell
Organ
868
pancreas
749
liver
639
connective tissue
479
epithelium
470
adipose tissue
337
kidney
336
heart
216
brain
191
vasculature
185
blood vessel
127
artery
88
limb
76
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
150
AMP
Genome assembly (visualization)
96
hg19
68
GRCh38
Lab
150
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
RNA microarray
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
150 results
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DNase-seq
ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
tissue
tibial nerve
2
1
19
5
islet of Langerhans
2
3
14
4
retina
3
15
3
muscle of arm
17
muscle of leg
13
3
1
+ See 11 more…
primary cell
retinal pigment epithelial cell
1
3
1
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