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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
36
DNase-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
45
DNA accessibility
36
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
53
histone
53
histone modification
broad histone mark
19
narrow histone mark
17
control
Date released
44
October, 2019
32
June, 2019
6
February, 2021
5
July, 2019
3
February, 2020
3
May, 2019
1
March, 2020
Available data
80
bam
58
bed narrowPeak
57
bigWig
50
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
94
Homo sapiens
Biosample type
94
tissue
Organ
868
pancreas
749
liver
639
connective tissue
479
epithelium
470
adipose tissue
337
kidney
336
heart
216
brain
191
vasculature
185
blood vessel
127
artery
88
limb
76
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
94
AMP
Genome assembly (visualization)
62
GRCh38
62
hg19
Lab
94
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
RNA microarray
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
94 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
19
2
1
5
muscle of arm
17
muscle of leg
3
13
1
tibial artery
9
2
1
1
islet of Langerhans
5
1
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