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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
981
total RNA-seq
906
ChIP-seq
196
ATAC-seq
178
DNase-seq
86
RNA microarray
74
single cell RNA-seq
WGBS
25
pCHi-C
22
snATAC-seq
16
small RNA-seq
14
Hi-C
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1071
Transcription
906
DNA binding
400
DNA accessibility
14
3D chromatin structure
Target of assay
627
histone modification
626
histone
324
narrow histone mark
302
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
269
August, 2017
242
October, 2019
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
59
July, 2019
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
23
October, 2017
20
November, 2018
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1889
bam
1755
bigWig
977
tsv
919
bed narrowPeak
560
bigBed narrowPeak
363
fastq
237
tagAlign
212
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
100
txt
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2502
Homo sapiens
Biosample type
2509
tissue
1025
primary cell
616
cell line
352
in vitro differentiated cells
10
stem cell
Organ
540
connective tissue
496
pancreas
481
adipose tissue
356
liver
264
brain
212
heart
170
kidney
158
bone element
125
blood vessel
125
vasculature
121
limb
77
musculature of body
71
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2412
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1778
GRCh38
1744
hg19
Lab
2287
AMP-T2D consortium
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
inconsistent assembly
assay_title!
RRBS
WGBS
audit.WARNING.category!
inconsistent assembly
month_released!
August, 2021
BIOSAMPLE
ASSAY
2509 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
291
71
68
1
6
4
7
2
1
4
adipose tissue
382
2
3
1
liver
167
145
20
2
1
1
1
1
kidney
27
11
13
56
1
bone element
84
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