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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
31
ChIP-seq
4
ATAC-seq
1
Hi-C
Assay category
191
DNA accessibility
31
DNA binding
1
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
695
February, 2021
406
November, 2017
405
August, 2017
382
May, 2021
340
May, 2020
310
October, 2019
218
June, 2019
213
August, 2021
204
February, 2023
166
May, 2022
120
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
61
November, 2019
40
May, 2024
39
February, 2018
35
December, 2018
32
March, 2020
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
16
November, 2020
12
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2022
Available data
219
bam
210
bed narrowPeak
210
bigBed narrowPeak
210
bigWig
188
bed broadPeak
187
bed bed3+
187
bigBed broadPeak
1
bedpe
1
fastq
1
hic
Organism
223
Homo sapiens
Biosample type
168
tissue
55
primary cell
Organ
81
kidney
43
musculature of body
35
heart
32
limb
30
brain
20
epithelium
18
connective tissue
18
ureter
9
pancreas
7
eye
7
vasculature
5
blood vessel
2
artery
2
liver
1
adipose tissue
Project
223
AMP
Genome assembly (visualization)
212
GRCh38
190
hg19
Lab
218
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
26
inconsistent ontology term
assay_title!
RRBS
pCHi-C
single cell RNA-seq
BIOSAMPLE
ASSAY
223 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 35 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 17 more…
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