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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1009
total RNA-seq
712
ChIP-seq
244
ATAC-seq
180
single cell RNA-seq
174
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
pCHi-C
16
small RNA-seq
15
Hi-C
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1205
Transcription
712
DNA binding
450
DNA accessibility
27
DNA methylation
15
3D chromatin structure
Target of assay
460
histone modification
459
histone
264
broad histone mark
195
narrow histone mark
160
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
279
August, 2017
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
71
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
20
March, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1721
bam
1612
bigWig
1048
tsv
833
bed narrowPeak
514
bigBed narrowPeak
374
fastq
209
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
157
txt
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2494
Homo sapiens
Biosample type
2503
tissue
968
primary cell
626
cell line
381
in vitro differentiated cells
6
stem cell
Organ
544
connective tissue
499
pancreas
486
adipose tissue
353
liver
301
heart
294
kidney
176
brain
158
bone element
106
blood vessel
106
vasculature
77
musculature of body
53
limb
47
artery
35
eye
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
1
nerve
1
spinal cord
Project
2407
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1698
GRCh38
1583
hg19
Lab
2152
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
RRBS
pCHi-C
month_released!
October, 2019
September, 2020
BIOSAMPLE
ASSAY
2503 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
small RNA-seq
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
278
50
55
6
1
7
3
1
4
adipose tissue
382
2
2
3
liver
166
140
20
1
2
3
1
1
kidney
49
23
75
64
13
6
1
1
bone element
84
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