Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
427
ChIP-seq
159
total RNA-seq
23
ATAC-seq
5
DNase-seq
3
Hi-C
small RNA-seq
RRBS
1
pCHi-C
Assay category
427
DNA binding
159
Transcription
28
DNA accessibility
3
3D chromatin structure
Target of assay
329
transcription factor
83
histone modification
82
histone
78
recombinant protein
55
RNA binding protein
52
narrow histone mark
30
broad histone mark
23
chromatin remodeller
14
control
2
other context
other post-translational modification
Date released
264
November, 2017
170
May, 2020
50
December, 2017
49
November, 2018
20
May, 2022
19
August, 2017
18
August, 2021
7
October, 2019
5
December, 2019
5
January, 2019
5
July, 2019
2
February, 2021
2
June, 2019
2
March, 2020
Available data
612
bigWig
580
bam
435
bed narrowPeak
387
fastq
352
bigBed narrowPeak
159
tsv
62
bed broadPeak
62
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
618
Homo sapiens
Biosample type
328
cell line
264
tissue
14
in vitro differentiated cells
12
primary cell
Organ
654
pancreas
618
liver
585
connective tissue
423
adipose tissue
305
epithelium
185
heart
164
vasculature
159
blood vessel
158
brain
124
kidney
96
limb
93
artery
70
bone element
68
musculature of body
55
blood
55
bodily fluid
33
eye
31
nerve
29
embryo
18
ureter
17
vein
12
skeleton
11
spleen
1
pericardium
1
pituitary gland
Project
618
AMP
Genome assembly (visualization)
618
hg19
526
GRCh38
Lab
583
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
RRBS
small RNA-seq
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
618 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
cell line
HepG2
320
5
1
1
1
tissue
liver
83
147
20
2
1
right lobe of liver
7
2
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
Download