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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
903
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
27
WGBS
24
pCHi-C
20
snATAC-seq
16
Hi-C
small RNA-seq
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1211
Transcription
903
DNA binding
462
DNA accessibility
27
DNA methylation
16
3D chromatin structure
Target of assay
624
histone modification
623
histone
320
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
279
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
55
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
39
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1891
bam
1756
bigWig
1059
tsv
984
bed narrowPeak
561
bigBed narrowPeak
374
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2728
Homo sapiens
Biosample type
2737
tissue
1068
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
493
pancreas
486
adipose tissue
357
liver
311
heart
297
kidney
260
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
77
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2648
AMP
47
KPMP
23
T1D
19
LungMap
Genome assembly (visualization)
1843
GRCh38
1730
hg19
Lab
2393
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
44
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
RRBS
small RNA-seq
month_released!
January, 2021
organ_slims!
ovary
BIOSAMPLE
ASSAY
2737 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
67
68
6
1
4
3
3
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
kidney
49
27
75
64
13
6
1
1
bone element
84
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