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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
7
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
RRBS
1
pCHi-C
Assay category
68
DNA binding
9
DNA accessibility
9
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
51
histone
51
histone modification
31
broad histone mark
20
narrow histone mark
13
control
4
RNA binding protein
4
transcription factor
Date released
45
May, 2019
21
October, 2019
8
July, 2019
6
November, 2017
5
June, 2019
4
August, 2021
4
March, 2020
1
February, 2020
Available data
83
bam
70
bigWig
59
bed narrowPeak
58
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
10
tsv
9
bed bed3+
6
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
94
Homo sapiens
Biosample type
60
tissue
34
primary cell
Organ
933
pancreas
788
liver
683
connective tissue
518
epithelium
491
adipose tissue
391
heart
344
kidney
284
brain
235
vasculature
230
blood vessel
159
bone element
artery
122
limb
90
musculature of body
60
eye
43
nerve
37
embryo
34
blood
34
bodily fluid
22
vein
18
spleen
18
ureter
16
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
94
AMP
Genome assembly (visualization)
71
hg19
63
GRCh38
Lab
94
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
RRBS
snATAC-seq
month_released!
December, 2018
organ_slims!
artery
BIOSAMPLE
ASSAY
94 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
aorta
13
1
1
4
2
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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