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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
907
ChIP-seq
181
ATAC-seq
179
single cell RNA-seq
178
DNase-seq
86
RNA microarray
27
WGBS
26
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
907
DNA binding
389
DNA accessibility
195
Transcription
27
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
220
October, 2019
190
August, 2017
179
August, 2021
163
June, 2019
115
May, 2019
101
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
February, 2023
50
May, 2020
48
December, 2017
47
September, 2023
40
July, 2019
40
May, 2022
40
May, 2024
31
March, 2020
26
November, 2018
23
October, 2017
21
November, 2019
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
May, 2021
Available data
1006
bam
921
bed narrowPeak
877
bigWig
561
bigBed narrowPeak
277
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
150
tsv
98
txt
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
1643
Homo sapiens
Biosample type
1652
tissue
512
primary cell
499
cell line
224
in vitro differentiated cells
10
stem cell
Organ
261
heart
248
kidney
246
brain
207
pancreas
190
liver
115
limb
92
bone element
91
blood vessel
91
connective tissue
91
vasculature
90
adipose tissue
73
musculature of body
38
nerve
36
artery
25
spleen
20
lung
18
ureter
10
eye
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
epithelium
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
1575
AMP
47
KPMP
19
LungMap
11
T1D
Genome assembly (visualization)
928
GRCh38
817
hg19
Lab
1395
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
27
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
RRBS
total RNA-seq
month_released!
February, 2023
organ_slims!
epithelium
BIOSAMPLE
ASSAY
1652 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
27
75
64
13
6
1
1
liver
145
20
1
2
3
1
1
1
islet of Langerhans
71
57
6
1
5
4
3
1
4
bone element
84
heart left ventricle
35
2
18
3
4
1
1
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