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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
133
ChIP-seq
32
DNase-seq
8
ATAC-seq
8
WGBS
4
small RNA-seq
Assay category
133
DNA binding
40
DNA accessibility
8
DNA methylation
4
Transcription
Target of assay
99
histone
99
histone modification
57
broad histone mark
42
narrow histone mark
34
transcription factor
16
RNA binding protein
Date released
47
April, 2019
40
May, 2024
34
June, 2019
17
August, 2017
15
May, 2019
14
July, 2019
6
October, 2019
5
October, 2018
4
February, 2021
1
January, 2018
1
November, 2018
1
October, 2017
Available data
204
bed narrowPeak
189
bam
185
bigWig
104
bigBed narrowPeak
100
tsv
44
fastq
36
bed bed3+
33
bed broadPeak
32
bigBed broadPeak
14
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
4
bedpe bed3+
3
hic
Organism
185
Homo sapiens
Biosample type
174
tissue
7
primary cell
4
cell line
Organ
463
liver
299
pancreas
225
epithelium
217
brain
155
heart
120
kidney
103
connective tissue
97
vasculature
92
blood vessel
87
limb
64
musculature of body
55
blood
55
bodily fluid
31
artery
30
adipose tissue
27
nerve
18
ureter
16
spleen
15
embryo
15
vein
6
eye
1
pituitary gland
Project
185
AMP
Genome assembly (visualization)
181
GRCh38
134
hg19
Lab
145
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
RRBS
total RNA-seq
BIOSAMPLE
ASSAY
185 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
tissue
left cardiac atrium
40
1
heart left ventricle
29
3
2
2
heart
12
18
1
1
heart right ventricle
11
1
2
white adipose tissue
12
+ See 7 more…
primary cell
cardiac fibroblast
3
3
mesenchymal stem cell of adipose
1
cell line
smooth muscle cell of the coronary artery
4
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