Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
total RNA-seq
RRBS
2
pCHi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
6
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
22
August, 2017
7
July, 2019
7
May, 2019
4
March, 2020
2
May, 2022
1
January, 2018
Available data
64
bigWig
60
bed narrowPeak
53
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
tsv
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
txt
Organism
86
Homo sapiens
Biosample type
74
tissue
12
primary cell
Organ
600
liver
547
pancreas
387
epithelium
319
heart
290
kidney
267
brain
209
connective tissue
174
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
85
artery
85
musculature of body
69
blood
69
bodily fluid
41
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
86
AMP
Genome assembly (visualization)
66
hg19
49
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
RRBS
total RNA-seq
BIOSAMPLE
ASSAY
86 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
See all biosamples
Download