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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
49
total RNA-seq
10
ChIP-seq
6
snATAC-seq
RRBS
3
snDrop-seq
2
DNase-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
Assay category
113
Transcription
10
DNA binding
9
DNA accessibility
1
3D chromatin structure
Target of assay
9
control
1
RNA binding protein
1
transcription factor
Date released
64
August, 2021
47
September, 2023
8
February, 2021
5
April, 2019
5
October, 2019
3
December, 2019
3
May, 2023
1
July, 2019
1
June, 2019
1
May, 2019
Available data
62
txt
11
bam
10
tsv
5
csv
1
bed narrowPeak
1
bigBed narrowPeak
1
bigWig
1
hic
Organism
138
Homo sapiens
Biosample type
133
tissue
cell line
5
primary cell
Organ
272
pancreas
194
epithelium
138
kidney
125
liver
123
heart
117
connective tissue
bone element
67
adipose tissue
67
brain
54
eye
42
vasculature
41
blood vessel
38
musculature of body
26
limb
20
lung
12
nerve
11
artery
10
vein
9
spleen
8
blood
8
bodily fluid
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
91
AMP
47
KPMP
Genome assembly (visualization)
GRCh38
113
hg19
Lab
67
Katalin Susztak, Upenn
47
KPMP
24
AMP-T2D consortium
Audit category:
7
audit script error
2
inconsistent ontology term
assay_title!
RRBS
assembly!
GRCh38
biosample_type!
cell line
organ_slims!
bone element
BIOSAMPLE
ASSAY
138 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
DNase-seq
RNA microarray
FAIRE-seq
Hi-C
tissue
kidney
64
49
7
6
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
+ See 1 more…
primary cell
epithelial cell of proximal tubule
2
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
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