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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
16
pCHi-C
8
snATAC-seq
2
total RNA-seq
Assay category
33
DNA binding
8
DNA accessibility
2
Transcription
Target of assay
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
3
control
Date released
51
May, 2021
8
January, 2021
Available data
35
bigWig
30
bed narrowPeak
2
bed bed3+
Organism
59
Homo sapiens
Biosample type
59
primary cell
52
tissue
47
in vitro differentiated cells
5
cell line
Organ
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
35
AMP
24
T1D
Genome assembly (visualization)
215
hg19
GRCh38
Lab
314
Klaus Kaestner, Upenn
169
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
RRBS
assembly!
GRCh38
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
pCHi-C
snATAC-seq
total RNA-seq
primary cell
CD8-positive, alpha-beta T cell
33
1
2
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
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