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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
12
total RNA-seq
6
pCHi-C
3
Hi-C
2
ATAC-seq
RRBS
1
FAIRE-seq
Assay category
47
DNA binding
12
Transcription
3
3D chromatin structure
3
DNA accessibility
Target of assay
28
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
28
November, 2017
12
February, 2020
9
October, 2017
8
October, 2019
5
March, 2020
4
July, 2019
3
May, 2019
1
February, 2023
1
May, 2021
Available data
36
tagAlign
28
bam
17
tsv
8
bigWig
6
fastq
3
bed bed3+
3
hdf5
2
bed narrowPeak
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
71
Homo sapiens
Biosample type
65
tissue
6
primary cell
Organ
309
pancreas
258
liver
224
epithelium
145
kidney
125
heart
117
connective tissue
93
bone element
67
adipose tissue
67
brain
54
eye
44
vasculature
43
blood vessel
38
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
70
AMP
1
T1D
Genome assembly (visualization)
GRCh38
162
hg19
Lab
70
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_title!
RRBS
assembly!
GRCh38
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
total RNA-seq
pCHi-C
Hi-C
ATAC-seq
FAIRE-seq
tissue
brain
9
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 23 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
choroid plexus epithelial cell
1
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