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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
35
ATAC-seq
8
WGBS
3
pCHi-C
3
total RNA-seq
1
single cell RNA-seq
Assay category
60
DNA binding
35
DNA accessibility
8
DNA methylation
4
Transcription
Target of assay
35
histone
35
histone modification
20
broad histone mark
20
control
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
August, 2021
40
May, 2024
36
February, 2023
10
April, 2019
8
July, 2019
6
May, 2019
3
February, 2020
3
March, 2020
2
February, 2021
2
June, 2019
Available data
78
bed narrowPeak
49
bigWig
29
bam
6
bed bedMethyl
6
bigBed bedMethyl
6
tsv
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
bigBed narrowPeak
2
tagAlign
Organism
110
Homo sapiens
Biosample type
106
tissue
2
cell line
2
primary cell
Organ
282
pancreas
204
epithelium
145
liver
110
heart
93
connective tissue
89
bone element
89
kidney
64
adipose tissue
64
blood vessel
64
vasculature
60
brain
46
artery
27
eye
26
limb
21
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
110
AMP
Genome assembly (visualization)
172
GRCh38
hg19
Lab
70
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
assay_title!
RRBS
assembly!
hg19
files.file_type!
bigBed narrowPeak
month_released!
August, 2021
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
ATAC-seq
WGBS
pCHi-C
total RNA-seq
single cell RNA-seq
tissue
left cardiac atrium
40
coronary artery
2
35
1
heart left ventricle
6
4
1
heart right ventricle
2
2
1
heart
2
1
1
+ See 3 more…
cell line
smooth muscle cell of the coronary artery
2
primary cell
cardiac fibroblast
2
See all biosamples
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