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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
4
Hi-C
RRBS
2
total RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
10
DNA binding
4
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
6
histone
6
histone modification
4
broad histone mark
4
control
2
narrow histone mark
Date released
7
August, 2017
5
July, 2019
2
February, 2020
2
June, 2019
1
March, 2020
1
May, 2019
1
May, 2022
Available data
4
bam
3
tsv
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
Organism
19
Homo sapiens
Biosample type
17
tissue
2
primary cell
Organ
283
pancreas
225
kidney
211
epithelium
203
heart
122
liver
89
bone element
74
connective tissue
blood vessel
69
vasculature
58
adipose tissue
47
brain
46
artery
27
eye
26
limb
20
lung
19
musculature of body
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
19
AMP
Genome assembly (visualization)
hg19
53
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
RRBS
assembly!
hg19
files.file_type!
tagAlign
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
7
1
gastrocnemius medialis
4
1
muscle of leg
1
1
left ventricle myocardium
1
psoas muscle
1
primary cell
skeletal muscle cell
1
skeletal muscle satellite cell
1
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