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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
3
single cell RNA-seq
2
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
66
DNA binding
4
DNA accessibility
3
Transcription
2
DNA methylation
Target of assay
39
transcription factor
26
histone
26
histone modification
13
narrow histone mark
12
broad histone mark
9
RNA binding protein
2
chromatin remodeller
1
control
Date released
65
August, 2017
5
October, 2018
2
July, 2018
1
April, 2018
1
November, 2018
1
October, 2017
Available data
565
bam
562
bigWig
474
tsv
75
fastq
71
bed narrowPeak
25
bigBed narrowPeak
19
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
0
csv
Organism
75
Homo sapiens
Biosample type
49
in vitro differentiated cells
23
tissue
3
primary cell
Organ
357
pancreas
343
liver
181
epithelium
75
connective tissue
54
blood
54
bodily fluid
23
adipose tissue
19
embryo
16
spleen
15
brain
4
vasculature
2
blood vessel
Project
75
AMP
Genome assembly (visualization)
75
GRCh38
73
hg19
Lab
75
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
assay_title!
RRBS
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
in vitro differentiated cells
adipocyte
48
1
tissue
white adipose tissue
12
omental fat pad
3
1
1
adipose tissue
1
2
subcutaneous adipose tissue
2
1
primary cell
pancreatic stellate cell
3
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