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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
526
ChIP-seq
161
DNase-seq
117
ATAC-seq
16
small RNA-seq
11
Hi-C
RRBS
6
single cell RNA-seq
4
FAIRE-seq
1
snATAC-seq
Assay category
918
Transcription
526
DNA binding
283
DNA accessibility
11
3D chromatin structure
Target of assay
438
histone modification
437
histone
239
narrow histone mark
198
broad histone mark
85
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
177
August, 2017
170
May, 2020
163
October, 2019
147
June, 2019
116
July, 2018
93
May, 2019
65
April, 2019
54
July, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
28
February, 2023
18
March, 2020
17
November, 2018
13
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1645
bam
1644
bigWig
918
tsv
774
bed narrowPeak
490
bigBed narrowPeak
288
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
105
tagAlign
11
hic
9
bedpe bed3+
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1732
Homo sapiens
Biosample type
1738
tissue
614
primary cell
502
cell line
292
in vitro differentiated cells
3
stem cell
Organ
482
connective tissue
424
adipose tissue
411
pancreas
267
liver
141
brain
112
heart
96
limb
91
kidney
70
blood vessel
70
vasculature
66
bone element
59
musculature of body
31
nerve
30
eye
27
artery
18
ureter
12
epithelium
11
spleen
8
skeleton
1
pituitary gland
Project
1736
AMP
2
T1D
Genome assembly (visualization)
1856
GRCh38
1738
hg19
Lab
1695
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
RRBS
award.project!
HPAP
files.file_type!
bed bed3
month_released!
December, 2018
BIOSAMPLE
ASSAY
1738 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
260
31
1
42
2
6
1
liver
147
83
2
20
1
1
bone tissue
58
heart left ventricle
3
29
3
2
1
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