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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
161
ATAC-seq
135
single cell RNA-seq
31
DNase-seq
17
pCHi-C
RRBS
8
snATAC-seq
6
Hi-C
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
384
Transcription
279
DNA binding
201
DNA accessibility
7
DNA methylation
6
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
88
February, 2023
73
September, 2018
58
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
40
September, 2020
33
October, 2019
22
July, 2019
21
February, 2021
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
613
bigWig
609
bam
381
fastq
295
bed narrowPeak
270
tsv
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
894
Homo sapiens
Biosample type
2757
tissue
894
primary cell
662
cell line
392
in vitro differentiated cells
10
stem cell
Organ
316
epithelium
263
pancreas
38
connective tissue
35
vasculature
33
kidney
30
blood vessel
21
vein
20
brain
13
liver
13
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
548
AMP
204
T1D
141
HPAP
1
ITG
Genome assembly (visualization)
614
hg19
536
GRCh38
Lab
513
AMP-T2D consortium
239
Kyle Gaulton, UCSD
141
Klaus Kaestner, Upenn
1
ITG
Audit category:
52
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
RRBS
audit.ERROR.category!
audit script error
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
894 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
snATAC-seq
Hi-C
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
13
12
6
pancreatic beta cell
13
21
10
12
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
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