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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
39
DNA binding
34
DNA accessibility
9
Transcription
6
3D chromatin structure
1
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
22
August, 2017
9
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
Organism
90
Homo sapiens
Biosample type
77
tissue
13
primary cell
Organ
940
pancreas
789
liver
683
connective tissue
513
epithelium
491
adipose tissue
391
heart
343
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
122
limb
90
musculature of body
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
21
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
90
AMP
Genome assembly (visualization)
69
hg19
53
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
audit script error
assay_title!
RRBS
audit.ERROR.category!
audit script error
lab.title!
Xin Sun, UCSD
organ_slims!
blood
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
See all biosamples
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