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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
250
ChIP-seq
238
total RNA-seq
149
ATAC-seq
128
single cell RNA-seq
35
snATAC-seq
26
DNase-seq
16
pCHi-C
9
Hi-C
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
368
Transcription
250
DNA binding
211
DNA accessibility
9
3D chromatin structure
7
DNA methylation
Target of assay
217
histone
217
histone modification
113
broad histone mark
104
narrow histone mark
29
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
139
May, 2020
82
February, 2023
73
September, 2018
58
August, 2017
48
February, 2021
43
April, 2018
42
July, 2018
40
September, 2020
32
October, 2019
28
June, 2019
21
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
September, 2017
3
August, 2018
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
564
bigWig
553
bam
401
fastq
265
bed narrowPeak
248
tsv
zippedFastqFolder
96
tagAlign
84
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
28
bed bed3+
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
861
Homo sapiens
Biosample type
2315
tissue
861
primary cell
264
in vitro differentiated cells
169
cell line
9
stem cell
Organ
311
epithelium
261
pancreas
35
vasculature
31
blood vessel
26
connective tissue
26
kidney
22
vein
20
brain
liver
8
blood
8
bodily fluid
7
heart
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
490
AMP
199
T1D
171
HPAP
1
ITG
Genome assembly (visualization)
567
hg19
490
GRCh38
Lab
455
AMP-T2D consortium
234
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
RRBS
audit.ERROR.category!
inconsistent ontology term
files.file_type!
zippedFastqFolder
organ_slims!
liver
BIOSAMPLE
ASSAY
861 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
13
12
1
6
Langerhans cell
33
27
pancreatic beta cell
13
21
10
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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