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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
244
ChIP-seq
233
total RNA-seq
186
ATAC-seq
176
single cell RNA-seq
56
snATAC-seq
47
WGBS
23
DNase-seq
14
pCHi-C
9
Hi-C
RRBS
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
410
Transcription
266
DNA accessibility
244
DNA binding
48
DNA methylation
9
3D chromatin structure
Target of assay
217
histone
217
histone modification
114
broad histone mark
103
narrow histone mark
26
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
139
May, 2020
134
May, 2022
82
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
45
February, 2021
41
April, 2018
40
July, 2018
32
October, 2019
25
June, 2019
15
July, 2019
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
June, 2018
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
544
bigWig
531
bam
389
fastq
257
bed narrowPeak
238
tsv
153
zippedFastqFolder
100
tagAlign
75
bigBed narrowPeak
35
bed broadPeak
35
bigBed broadPeak
27
bed bed3+
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
tar
Organism
991
Homo sapiens
Biosample type
2047
tissue
991
primary cell
255
cell line
186
in vitro differentiated cells
9
stem cell
Organ
385
epithelium
341
pancreas
29
vasculature
28
blood vessel
connective tissue
26
kidney
22
vein
12
liver
11
brain
8
blood
8
bodily fluid
7
heart
5
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
468
AMP
324
HPAP
198
T1D
1
ITG
Genome assembly (visualization)
546
hg19
472
GRCh38
Lab
433
AMP-T2D consortium
324
Klaus Kaestner, Upenn
233
Kyle Gaulton, UCSD
1
ITG
Audit category:
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
RRBS
audit.ERROR.category!
inconsistent ontology term
month_released!
November, 2017
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
991 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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