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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ATAC-seq
6
MeRIP-seq
5
ChIP-seq
2
Capture-C
2
pCHi-C
1
Hi-C
1
STARR-seq
Assay category
17
DNA accessibility
5
DNA binding
1
3D chromatin structure
Target of assay
8
control
3
nucleotide modification
Date released
16
May, 2021
6
November, 2020
4
November, 2019
3
August, 2021
3
October, 2019
2
March, 2020
Available data
62
bam
bigWig
39
tsv
21
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
34
Homo sapiens
Biosample type
88
tissue
34
cell line
22
in vitro differentiated cells
primary cell
1
stem cell
Organ
28
epithelium
28
pancreas
5
kidney
Project
34
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
27
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
34
inconsistent ontology term
1
inconsistent replicate
assay_title!
RRBS
biosample_type!
primary cell
files.file_type!
bigWig
BIOSAMPLE
ASSAY
34 results
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ATAC-seq
MeRIP-seq
ChIP-seq
Capture-C
pCHi-C
Hi-C
STARR-seq
cell line
EndoC_BH1
17
6
2
2
1
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
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