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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ChIP-seq
3
pCHi-C
1
ATAC-seq
RRBS
Assay category
4
DNA binding
1
DNA accessibility
Target of assay
3
control
1
histone
1
histone modification
1
narrow histone mark
Date released
3
June, 2019
1
February, 2021
1
March, 2020
1
May, 2021
1
November, 2020
1
October, 2019
Available data
92
bam
bigWig
72
tsv
17
bed narrowPeak
15
bigBed narrowPeak
8
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
fastq
1
bed bed3
1
hdf5
Organism
8
Homo sapiens
Biosample type
in vitro differentiated cells
6
primary cell
1
stem cell
1
tissue
Organ
320
pancreas
219
kidney
213
epithelium
167
heart
166
liver
101
bone element
80
blood vessel
80
vasculature
73
connective tissue
adipose tissue
62
brain
56
artery
54
eye
31
limb
23
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
7
AMP
1
T1D
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
7
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
assay_title!
RRBS
biosample_type!
in vitro differentiated cells
files.file_type!
bigWig
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
8 results
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ChIP-seq
pCHi-C
ATAC-seq
primary cell
cardiac fibroblast
2
osteoblast
1
1
adult endothelial progenitor cell
1
mesenchymal stem cell
1
stem cell
mesenchymal stem cell
1
tissue
islet of Langerhans
1
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