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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
DNase-seq
108
ChIP-seq
2
ATAC-seq
Assay category
195
DNA accessibility
108
DNA binding
Target of assay
61
histone
61
histone modification
47
transcription factor
34
broad histone mark
27
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
66
November, 2017
40
August, 2017
9
November, 2018
4
October, 2017
3
October, 2019
1
March, 2019
November, 2020
Available data
2910
bam
2750
bigWig
1550
bed narrowPeak
1397
tsv
1207
fastq
941
bigBed narrowPeak
352
tagAlign
303
bed broadPeak
266
bigBed broadPeak
234
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
16
hic
14
bedpe bed3+
8
csv
7
bed bed3
3
cool
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
297
Homo sapiens
Biosample type
208
tissue
59
cell line
36
primary cell
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
vasculature
13
blood vessel
8
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
303
AMP
Genome assembly (visualization)
280
hg19
265
GRCh38
Lab
301
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assay_title!
RRBS
biosample_type!
in vitro differentiated cells
month_released!
November, 2020
organ_slims!
vasculature
BIOSAMPLE
ASSAY
303 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 12 more…
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