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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
79
ChIP-seq
5
Hi-C
Assay category
205
DNA accessibility
79
DNA binding
5
3D chromatin structure
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
64
November, 2017
14
August, 2017
10
October, 2019
9
November, 2018
4
July, 2019
1
November, 2020
Available data
3067
bam
2880
bigWig
1655
bed narrowPeak
1469
tsv
1178
fastq
995
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
19
hic
17
bed bedMethyl
17
bigBed bedMethyl
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
289
Homo sapiens
Biosample type
176
tissue
60
cell line
53
primary cell
in vitro differentiated cells
Organ
78
kidney
64
liver
41
brain
36
limb
33
musculature of body
30
heart
24
epithelium
19
vasculature
18
ureter
15
blood vessel
9
connective tissue
8
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
289
AMP
Genome assembly (visualization)
267
GRCh38
266
hg19
Lab
289
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assay_title!
RRBS
biosample_type!
in vitro differentiated cells
month_released!
December, 2018
BIOSAMPLE
ASSAY
289 results
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DNase-seq
ChIP-seq
Hi-C
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
58
Panc1
1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
+ See 19 more…
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