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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
298
ChIP-seq
17
WGBS
RRBS
1
Hi-C
Assay category
298
DNA binding
17
DNA methylation
1
3D chromatin structure
Target of assay
223
histone
223
histone modification
127
narrow histone mark
96
broad histone mark
66
control
9
transcription factor
Date released
78
November, 2017
75
August, 2017
50
May, 2020
49
October, 2019
20
August, 2021
14
October, 2017
8
February, 2021
8
July, 2019
7
November, 2018
6
May, 2021
1
March, 2019
Available data
2783
bam
2556
bigWig
1522
bed narrowPeak
1330
tsv
946
fastq
933
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
19
bedpe bed3+
17
bed bedMethyl
17
bigBed bedMethyl
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
309
Homo sapiens
Biosample type
255
tissue
primary cell
40
in vitro differentiated cells
21
cell line
Organ
118
brain
83
liver
24
connective tissue
24
pancreas
16
musculature of body
12
heart
10
adipose tissue
7
blood vessel
7
vasculature
6
artery
3
epithelium
2
spleen
1
limb
1
pituitary gland
Project
316
AMP
Genome assembly (visualization)
165
GRCh38
140
hg19
Lab
315
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
assay_title!
RRBS
biosample_type!
primary cell
BIOSAMPLE
ASSAY
316 results
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Clear Filters
ChIP-seq
WGBS
Hi-C
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 52 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
1
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
See all biosamples
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