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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
144
ChIP-seq
136
total RNA-seq
40
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
144
DNA binding
138
Transcription
40
DNA accessibility
4
3D chromatin structure
Target of assay
74
histone
74
histone modification
43
transcription factor
38
narrow histone mark
35
broad histone mark
27
control
9
RNA binding protein
2
chromatin remodeller
Date released
126
May, 2021
53
August, 2017
39
February, 2018
29
December, 2017
26
February, 2021
22
August, 2021
16
February, 2023
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
tagAlign
25
bed bed3+
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
337
Homo sapiens
Biosample type
2005
tissue
880
primary cell
337
in vitro differentiated cells
296
cell line
10
stem cell
Organ
80
connective tissue
29
embryo
7
epithelium
1
adipose tissue
1
heart
1
liver
Project
337
AMP
Genome assembly (visualization)
263
hg19
232
GRCh38
4
hg18
Lab
283
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
RRBS
files.file_type!
bigBed narrowPeak
tagAlign
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
337 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
53
5
6
1
cardiomyocytes
59
embryonic stem cell
40
7
6
1
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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