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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
ChIP-seq
130
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
Hi-C
3
GRO-seq
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
176
DNA binding
132
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
100
histone
100
histone modification
52
broad histone mark
47
narrow histone mark
46
transcription factor
30
control
11
RNA binding protein
3
chromatin remodeller
Date released
130
May, 2021
68
August, 2017
42
August, 2021
30
December, 2017
26
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
3
January, 2018
2
December, 2019
1
August, 2018
Available data
263
bam
238
bigWig
125
tsv
118
bed narrowPeak
114
fastq
40
tagAlign
22
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
365
Homo sapiens
Biosample type
2726
tissue
1078
primary cell
654
cell line
365
in vitro differentiated cells
10
stem cell
Organ
97
connective tissue
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
365
AMP
Genome assembly (visualization)
276
hg19
244
GRCh38
3
hg18
Lab
311
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
14
inconsistent control read length
assay_title!
RRBS
lab.title!
Karen Mohlke, UNC
organ_slims!
embryo
BIOSAMPLE
ASSAY
365 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
Hi-C
GRO-seq
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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