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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
ChIP-seq
52
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
136
DNA binding
54
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
77
histone
77
histone modification
39
broad histone mark
37
narrow histone mark
31
transcription factor
28
control
4
RNA binding protein
2
chromatin remodeller
Date released
May, 2021
68
August, 2017
42
August, 2021
39
February, 2018
26
February, 2021
24
December, 2017
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
187
bam
154
bigWig
122
fastq
111
bed narrowPeak
52
tsv
34
tagAlign
25
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
243
Homo sapiens
Biosample type
2710
tissue
583
cell line
472
primary cell
243
in vitro differentiated cells
10
stem cell
Organ
96
connective tissue
27
embryo
epithelium
15
liver
1
adipose tissue
Project
243
AMP
Genome assembly (visualization)
192
hg19
165
GRCh38
4
hg18
Lab
236
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
43
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
assay_title!
RRBS
month_released!
May, 2021
organ_slims!
adrenal gland
epithelium
BIOSAMPLE
ASSAY
243 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
definitive endodermal cell
8
2
1
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