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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
266
ChIP-seq
245
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
RRBS
6
Hi-C
4
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
434
Transcription
266
DNA binding
261
DNA accessibility
48
DNA methylation
6
3D chromatin structure
Target of assay
234
histone
234
histone modification
121
broad histone mark
113
narrow histone mark
35
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
204
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
56
August, 2017
48
July, 2018
47
February, 2021
43
April, 2018
32
October, 2019
27
June, 2019
18
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
5
December, 2019
5
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
603
bigWig
599
bam
403
fastq
285
bed narrowPeak
270
tsv
153
zippedFastqFolder
100
tagAlign
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1031
Homo sapiens
Biosample type
2479
tissue
1031
primary cell
326
in vitro differentiated cells
298
cell line
7
stem cell
Organ
374
epithelium
346
pancreas
29
connective tissue
26
vasculature
24
blood vessel
21
kidney
20
vein
12
musculature of body
9
brain
8
blood
8
bodily fluid
8
heart
7
liver
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
502
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
578
hg19
497
GRCh38
Lab
469
AMP-T2D consortium
324
Klaus Kaestner, Upenn
237
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
RRBS
files.file_type!
bed bed3+
organ_slims!
spinal cord
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
1031 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
exocrine cell
39
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