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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
165
total RNA-seq
129
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
31
DNase-seq
17
pCHi-C
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
280
Transcription
217
DNA accessibility
209
DNA binding
6
3D chromatin structure
1
DNA methylation
Target of assay
179
histone
179
histone modification
95
broad histone mark
84
narrow histone mark
23
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
55
June, 2019
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
34
October, 2019
21
July, 2019
17
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
2
June, 2018
1
March, 2023
1
November, 2018
1
September, 2018
Available data
420
bigWig
414
bam
227
bed narrowPeak
161
tsv
150
fastq
100
tagAlign
87
bigBed narrowPeak
73
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
4
hdf5
3
hic
2
csv
1
bed bed3
bedpe bed3+
1
tar
Organism
730
Homo sapiens
Biosample type
2256
tissue
730
primary cell
569
cell line
384
in vitro differentiated cells
10
stem cell
Organ
396
epithelium
pancreas
38
connective tissue
35
vasculature
33
kidney
30
blood vessel
21
vein
20
brain
13
liver
13
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
pericardium
Project
353
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
431
hg19
343
GRCh38
Lab
318
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
47
inconsistent ontology term
28
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_title!
RRBS
files.file_type!
bedpe bed3+
organ_slims!
pancreas
pericardium
BIOSAMPLE
ASSAY
730 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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