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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
28
ChIP-seq
17
pCHi-C
RRBS
6
Hi-C
2
DNase-seq
1
DNAme array
Assay category
182
Transcription
179
DNA accessibility
48
DNA methylation
28
DNA binding
6
3D chromatin structure
Target of assay
24
control
7
histone
7
histone modification
4
broad histone mark
narrow histone mark
Date released
134
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
46
February, 2021
33
May, 2021
12
August, 2017
9
October, 2019
8
January, 2021
8
June, 2019
3
October, 2022
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
1
November, 2020
1
September, 2018
Available data
496
bam
bigWig
368
fastq
265
tsv
187
bed narrowPeak
153
zippedFastqFolder
81
bigBed narrowPeak
51
tagAlign
39
bed broadPeak
39
bigBed broadPeak
31
bed bed3+
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
460
Homo sapiens
Biosample type
851
tissue
460
primary cell
119
in vitro differentiated cells
71
cell line
7
stem cell
Organ
168
epithelium
154
pancreas
8
blood
8
bodily fluid
6
blood vessel
6
connective tissue
6
vasculature
6
vein
5
kidney
2
heart
liver
2
musculature of body
1
bone element
1
bone marrow
1
eye
Project
314
HPAP
121
AMP
24
T1D
1
ITG
Genome assembly (visualization)
21
hg19
16
GRCh38
Lab
314
Klaus Kaestner, Upenn
121
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
13
inconsistent ontology term
assay_title!
RRBS
files.file_type!
bigWig
organ_slims!
liver
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
460 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
Hi-C
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
6
1
pancreatic beta cell
13
11
16
6
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
1
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