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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
248
ChIP-seq
247
total RNA-seq
200
ATAC-seq
136
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
RRBS
7
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
385
Transcription
264
DNA accessibility
248
DNA binding
48
DNA methylation
10
3D chromatin structure
Target of assay
218
histone
218
histone modification
114
broad histone mark
104
narrow histone mark
27
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
June, 2019
48
February, 2021
July, 2018
43
April, 2018
34
October, 2019
22
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
515
bigWig
503
bam
357
fastq
248
bed narrowPeak
219
tsv
153
zippedFastqFolder
100
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
13
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
972
Homo sapiens
Biosample type
2483
tissue
972
primary cell
662
cell line
393
in vitro differentiated cells
10
stem cell
Organ
344
epithelium
306
pancreas
32
vasculature
29
blood vessel
22
vein
20
kidney
19
connective tissue
15
brain
11
liver
8
blood
8
bodily fluid
4
heart
2
adipose tissue
2
artery
2
musculature of body
1
bone element
1
bone marrow
1
pericardium
Project
443
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
527
hg19
438
GRCh38
Lab
408
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
21
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
RRBS
month_released!
August, 2018
July, 2018
June, 2019
BIOSAMPLE
ASSAY
972 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
3
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
3
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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