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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
229
total RNA-seq
198
ATAC-seq
180
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
15
pCHi-C
6
Hi-C
1
DNAme array
1
FAIRE-seq
RRBS
Assay category
409
Transcription
280
DNA accessibility
267
DNA binding
48
DNA methylation
6
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
29
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
46
July, 2018
45
February, 2021
41
April, 2018
38
June, 2019
34
October, 2019
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
566
bigWig
561
bam
405
fastq
278
bed narrowPeak
243
tsv
153
zippedFastqFolder
100
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
26
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
tar
Organism
1025
Homo sapiens
Biosample type
2158
tissue
1025
primary cell
662
cell line
297
in vitro differentiated cells
9
stem cell
Organ
393
epithelium
346
pancreas
32
vasculature
connective tissue
29
kidney
27
blood vessel
22
vein
14
brain
12
liver
11
musculature of body
8
blood
8
bodily fluid
8
heart
4
eye
1
bone element
1
bone marrow
Project
497
AMP
324
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
570
hg19
492
GRCh38
Lab
462
AMP-T2D consortium
324
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
40
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
RRBS
month_released!
July, 2019
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
1025 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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