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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
174
single cell RNA-seq
168
ATAC-seq
107
total RNA-seq
87
RNA microarray
28
snATAC-seq
21
pCHi-C
16
Hi-C
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
281
Transcription
197
DNA accessibility
183
DNA binding
16
3D chromatin structure
10
DNA methylation
Target of assay
160
histone
160
histone modification
81
broad histone mark
79
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
2
nucleotide modification
Date released
229
August, 2021
109
August, 2017
93
February, 2021
64
February, 2023
47
September, 2023
42
May, 2022
40
May, 2024
35
October, 2019
31
March, 2020
24
February, 2020
19
April, 2020
15
May, 2023
13
November, 2017
8
January, 2021
8
October, 2017
7
July, 2019
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
1
November, 2019
Available data
bam
1653
bigWig
955
tsv
954
bed narrowPeak
558
bigBed narrowPeak
372
fastq
238
tagAlign
210
bed broadPeak
202
bed bed3+
173
bigBed broadPeak
157
txt
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
800
Homo sapiens
Biosample type
802
tissue
469
primary cell
103
in vitro differentiated cells
80
cell line
7
stem cell
Organ
200
kidney
180
heart
92
bone element
72
liver
70
pancreas
eye
49
connective tissue
48
adipose tissue
46
blood vessel
46
vasculature
39
artery
38
brain
34
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
707
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
156
GRCh38
71
hg19
Lab
475
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
assay_title!
RRBS
files.file_type!
bam
month_released!
July, 2018
organ_slims!
eye
BIOSAMPLE
ASSAY
802 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
64
75
49
6
1
islet of Langerhans
39
29
8
7
3
4
bone element
84
liver
23
1
20
20
1
1
3
left cardiac atrium
40
18
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