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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
ChIP-seq
22
total RNA-seq
16
ATAC-seq
4
DNase-seq
4
pCHi-C
1
Hi-C
Assay category
243
DNA binding
22
Transcription
20
DNA accessibility
1
3D chromatin structure
Target of assay
173
histone
173
histone modification
131
narrow histone mark
42
broad histone mark
39
control
31
transcription factor
2
RNA binding protein
2
chromatin remodeller
Date released
539
February, 2021
279
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
71
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
234
bam
196
bigWig
187
bed narrowPeak
83
bigBed narrowPeak
49
tagAlign
48
fastq
8
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
290
Homo sapiens
Biosample type
290
tissue
51
in vitro differentiated cells
34
primary cell
30
cell line
3
stem cell
Organ
86
brain
69
limb
54
liver
42
nerve
26
artery
26
blood vessel
26
vasculature
21
eye
8
heart
4
gonad
4
kidney
4
ovary
3
pancreas
2
connective tissue
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
290
AMP
Genome assembly (visualization)
199
hg19
197
GRCh38
Lab
290
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
assay_title!
RRBS
files.file_type!
csv
BIOSAMPLE
ASSAY
290 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
14
13
4
liver
43
1
tibial nerve
35
4
1
2
tibial artery
23
1
2
right lobe of liver
10
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