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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
377
ChIP-seq
177
DNase-seq
16
WGBS
RRBS
4
FAIRE-seq
3
ATAC-seq
Assay category
377
DNA binding
184
DNA accessibility
16
DNA methylation
Target of assay
312
histone
312
histone modification
204
broad histone mark
108
narrow histone mark
65
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
93
May, 2019
64
April, 2019
57
November, 2017
47
October, 2019
45
October, 2018
36
December, 2017
24
August, 2017
23
November, 2018
10
July, 2019
6
January, 2019
6
October, 2017
3
December, 2018
Available data
1907
bam
1772
bigWig
1072
tsv
921
bed narrowPeak
561
bigBed narrowPeak
374
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
153
txt
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
571
Homo sapiens
Biosample type
577
tissue
356
cell line
109
primary cell
17
in vitro differentiated cells
Organ
116
brain
94
heart
87
kidney
85
limb
66
pancreas
63
blood vessel
63
vasculature
49
liver
39
musculature of body
26
nerve
25
artery
18
ureter
15
spleen
12
adipose tissue
12
connective tissue
3
eye
Project
577
AMP
Genome assembly (visualization)
571
GRCh38
493
hg19
Lab
577
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
RRBS
month_released!
February, 2023
BIOSAMPLE
ASSAY
577 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
ATAC-seq
tissue
liver
38
2
heart left ventricle
28
3
2
body of pancreas
26
4
2
kidney
18
13
1
heart
7
18
1
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